PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 217aa    MW: 25123.4 Da    PI: 9.558
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513021.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.8e-1735124198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k +++s+v++  +l+lp+ f++ h   ++ ++t+tl des ++++ k+  ++++    l++GW++F  a++L egD++vF+l +  +  l+v 
  XP_016513021.1  35 FMKPMIRSNVTAGFWLSLPRFFCQLHL--PRHDTTVTLVDESQEEYKTKYLAERNG----LSGGWRGFSLAHNLVEGDVLVFQLFRFCK--LKVY 121
                     89*********************8884..35678****************555555....9**********************865344..4777 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_016513021.1 122 IVR 124
                     766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1927126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-2228126IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-2433124No hitNo description
PROSITE profilePS5086312.08335126IPR003340B3 DNA binding domain
SMARTSM010194.1E-1935126IPR003340B3 DNA binding domain
PfamPF023625.3E-1535125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAMMQNLYGR FDLASSAKYR AEEVQSRLST KYPSFMKPMI RSNVTAGFWL SLPRFFCQLH  60
LPRHDTTVTL VDESQEEYKT KYLAERNGLS GGWRGFSLAH NLVEGDVLVF QLFRFCKLKV  120
YIVRANYLAE VDAALVLLHL DAHQKQANPE QCTKCRIIEV RNKVESSVKD FPHNEKRMII  180
LQKKTCYTNI VIQGICSRIL TCLQKDLPTK ILALWML
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755132e-62HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513021.11e-164PREDICTED: B3 domain-containing protein At3g19184-like isoform X2
SwissprotQ1G3M33e-43Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLK4B3289e-97K4B328_SOLLC; Uncharacterized protein
TrEMBLM1CFC41e-97M1CFC4_SOLTU; Uncharacterized protein
TrEMBLM1CFC78e-98M1CFC7_SOLTU; Uncharacterized protein
STRINGSolyc01g108120.2.12e-96(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.15e-44B3 family protein